| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031937 |
Definition |
Escherichia phage LM33_P1 genome assembly, chromosome: I. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Escherichia virus LM33P1. |
DB of origin |
REFSEQ |
Length |
38979 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
50.18 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009324490.1 | NC_031937_p16 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 8324 | 8662 |
| YP_009324501.1 | NC_031937_p27 | Phage HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 15966 | 16175 |
| YP_009324493.1 | NC_031937_p19 | T7-like phage endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9682 | 10101 |
| YP_009324484.1 | NC_031937_p10 | hypothetical protein | phrog_8082 | unknown function | unknown function | 1 | 5863 | 6078 |
| YP_009324507.1 | NC_031937_p33 | Phage collar / T7-like phage head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 18440 | 20008 |
| YP_009324510.1 | NC_031937_p36 | hypothetical protein | phrog_7473 | unknown function | unknown function | 1 | 22221 | 22427 |
| YP_009324487.1 | NC_031937_p13 | DNA ligase, phage-associated | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6697 | 7785 |
| YP_009324504.1 | NC_031937_p30 | adsorption | phrog_1391 | unknown function | unknown function | 1 | 17536 | 17760 |
| YP_009324496.1 | NC_031937_p22 | T7-like phage primase/helicase protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11197 | 12897 |
| YP_009324503.1 | NC_031937_p29 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17249 | 17521 |
| YP_009324513.1 | NC_031937_p39 | Phage tail fiber protein / T7-like tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23390 | 25747 |
| YP_009324515.1 | NC_031937_p41 | Phage internal (core) protein | phrog_805 | internal virion protein | head and packaging | 1 | 26279 | 26866 |
| YP_009324482.1 | NC_031937_p8 | T7-like phage DNA-directed RNA polymerase | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4920 | 5606 |
| YP_009324520.1 | NC_031937_p46 | DNA packaging protein A, T7-like gp18 | phrog_1351 | terminase small subunit | head and packaging | 1 | 35633 | 35896 |
| YP_009324498.1 | NC_031937_p24 | T7-like phage DNA Polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13168 | 15339 |
| YP_009324485.1 | NC_031937_p11 | hypothetical protein | phrog_4383 | unknown function | unknown function | 1 | 6250 | 6429 |
| YP_009324497.1 | NC_031937_p23 | hypothetical protein | phrog_13039 | unknown function | unknown function | 1 | 12940 | 13104 |
| YP_009324492.1 | NC_031937_p18 | T7-like phage ssDNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8957 | 9649 |
| YP_009324476.1 | NC_031937_p2 | hypothetical protein | phrog_10124 | unknown function | unknown function | 1 | 783 | 1037 |
| YP_009324509.1 | NC_031937_p35 | Phage capsid and scaffold | phrog_267 | major head protein | head and packaging | 1 | 21115 | 22164 |
| YP_009324481.1 | NC_031937_p7 | DNA-directed RNA polymerase | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2925 | 4892 |
| YP_009324506.1 | NC_031937_p32 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18180 | 18428 |
| YP_009324489.1 | NC_031937_p15 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8070 | 8324 |
| YP_009324499.1 | NC_031937_p25 | hypothetical protein | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15350 | 15658 |
| YP_009324486.1 | NC_031937_p12 | dGTP triphosphohydrolase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 6434 | 6697 |
| YP_009324495.1 | NC_031937_p21 | Phage lysin, N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 10582 | 11040 |
| YP_009324512.1 | NC_031937_p38 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 23153 | 23380 |
| YP_009324517.1 | NC_031937_p43 | Phage internal (core) protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29165 | 33052 |
| YP_009324505.1 | NC_031937_p31 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17765 | 18187 |
| YP_009324488.1 | NC_031937_p14 | hypothetical protein | phrog_36761 | unknown function | unknown function | 1 | 7782 | 7961 |
| YP_009324478.1 | NC_031937_p4 | hypothetical protein | phrog_32657 | unknown function | unknown function | 1 | 1837 | 2064 |
| YP_009324502.1 | NC_031937_p28 | phage exonuclease, | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16172 | 17038 |
| YP_009324522.1 | NC_031937_p48 | Phage DNA packaging | phrog_38 | terminase large subunit | head and packaging | 1 | 36439 | 38202 |
| YP_009324519.1 | NC_031937_p45 | Phage holin, class II | phrog_920 | holin | lysis | 1 | 35442 | 35636 |
| YP_009324477.1 | NC_031937_p3 | Phage protein kinase | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 1121 | 1624 |
| YP_009324483.1 | NC_031937_p9 | hypothetical protein | phrog_28104 | unknown function | unknown function | 1 | 5622 | 5852 |
| YP_009324523.1 | NC_031937_p49 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38500 | 38658 |
| YP_009324514.1 | NC_031937_p40 | Phage internal (core) protein | phrog_308 | internal virion protein | head and packaging | 1 | 25824 | 26294 |
| YP_009324494.1 | NC_031937_p20 | hypothetical protein | phrog_16385 | unknown function | unknown function | 1 | 10101 | 10592 |
| YP_009324500.1 | NC_031937_p26 | Phage HNS binding protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 15670 | 15969 |
| YP_009324508.1 | NC_031937_p34 | Phage capsid and scaffold | phrog_1052 | head assembly | head and packaging | 1 | 20103 | 20987 |
| YP_009324491.1 | NC_031937_p17 | Host RNA polymerase inhibitor, T7-like gp2 | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 8741 | 8899 |
| YP_009324511.1 | NC_031937_p37 | Phage tail fiber protein / T7-like tail tubular protein A | phrog_446 | tail protein | tail | 1 | 22587 | 23153 |
| YP_009324479.1 | NC_031937_p5 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 2298 | 2501 |
| YP_009324521.1 | NC_031937_p47 | Phage endopeptidase Rz | phrog_1327 | Rz-like spanin | lysis | 1 | 35993 | 36442 |
| YP_009324516.1 | NC_031937_p42 | Phage internal (core) protein | phrog_1339 | internal virion protein | head and packaging | 1 | 26878 | 29160 |
| YP_009324518.1 | NC_031937_p44 | Phage tail fibers | phrog_27367 | tail fiber protein | tail | 1 | 33117 | 35297 |
| YP_009324475.1 | NC_031937_p1 | Hypothetical protein | phrog_30192 | unknown function | unknown function | 1 | 361 | 579 |
| YP_009324480.1 | NC_031937_p6 | hypothetical protein | phrog_7066 | unknown function | unknown function | 1 | 2501 | 2827 |