| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031940 |
Definition |
Salmonella phage 118970_sal3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
77375 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
135 |
%GC |
50.7 |
Number of singletons |
21 |
Number of paralogs |
41 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009324838.1 | NC_031940_p127 | hypothetical protein | phrog_96 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 72103 | 73092 |
| YP_009324737.1 | NC_031940_p26 | tail protein | phrog_180 | baseplate wedge subunit | tail | 1 | 13245 | 13589 |
| YP_009324802.1 | NC_031940_p91 | tail protein | phrog_28 | tail length tape measure protein | tail | 1 | 47871 | 49799 |
| YP_009324796.1 | NC_031940_p85 | hypothetical protein | phrog_879 | tail completion or Neck1 protein | connector | 1 | 44384 | 44896 |
| YP_009324725.1 | NC_031940_p14 | tail sheath protein | phrog_5292 | tail sheath | tail | 1 | 6184 | 6474 |
| YP_009324840.1 | NC_031940_p129 | hypothetical protein | phrog_3501 | unknown function | unknown function | 1 | 74009 | 74266 |
| YP_009324790.1 | NC_031940_p79 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 40624 | 41586 |
| YP_009324772.1 | NC_031940_p61 | methyl-directed repair DNA adenine methylase | phrog_56 | DNA methyltransferase | other | 1 | 30475 | 31356 |
| YP_009324789.1 | NC_031940_p78 | hypothetical protein | phrog_37237 | unknown function | unknown function | -1 | 40426 | 40593 |
| YP_009324776.1 | NC_031940_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33495 | 33629 |
| YP_009324750.1 | NC_031940_p39 | integrase protein | phrog_1 | integrase | integration and excision | -1 | 19586 | 20575 |
| YP_009324798.1 | NC_031940_p87 | hypothetical protein | phrog_208 | unknown function | unknown function | 1 | 45457 | 45621 |
| YP_009324714.1 | NC_031940_p3 | integral membrane protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 582 | 758 |
| YP_009324843.1 | NC_031940_p132 | i-spanin (Rz) | phrog_214 | Rz-like spanin | lysis | 1 | 75677 | 76069 |
| YP_009324806.1 | NC_031940_p95 | tail protein | phrog_180 | baseplate wedge subunit | tail | 1 | 52766 | 53179 |
| YP_009324846.1 | NC_031940_p135 | hypothetical protein | phrog_6050 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 77137 | 77265 |
| YP_009324795.1 | NC_031940_p84 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 44008 | 44412 |
| YP_009324780.1 | NC_031940_p69 | lytic enzyme | phrog_181 | endolysin | lysis | 1 | 35603 | 36217 |
| YP_009324805.1 | NC_031940_p94 | base plate assembly protein | phrog_11 | baseplate spike | tail | 1 | 52228 | 52761 |
| YP_009324754.1 | NC_031940_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21417 | 21773 |
| YP_009324791.1 | NC_031940_p80 | pro-head protease | phrog_80 | head maturation protease | head and packaging | 1 | 41564 | 42214 |
| YP_009324724.1 | NC_031940_p13 | hypothetical protein | phrog_5122 | unknown function | unknown function | 1 | 5684 | 5866 |
| YP_009324809.1 | NC_031940_p98 | tail protein | phrog_454 | tail fiber protein | tail | 1 | 54828 | 56390 |
| YP_009324746.1 | NC_031940_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17957 | 18148 |
| YP_009324829.1 | NC_031940_p118 | hypothetical protein | phrog_101 | CII-like transcriptional activator | transcription regulation | 1 | 66710 | 67264 |
| YP_009324797.1 | NC_031940_p86 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 44893 | 45453 |
| YP_009324773.1 | NC_031940_p62 | holiday-junction resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 31365 | 31754 |
| YP_009324819.1 | NC_031940_p108 | hypothetical protein | phrog_60 | unknown function | unknown function | -1 | 61006 | 61587 |
| YP_009324765.1 | NC_031940_p54 | DNA binding protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 26869 | 27093 |
| YP_009324729.1 | NC_031940_p18 | hypothetical protein | phrog_166 | tail protein | tail | 1 | 7871 | 8269 |
| YP_009324732.1 | NC_031940_p21 | tail/DNA circulation protein | singleton | unknown function | unknown function | 1 | 10533 | 10973 |
| YP_009324755.1 | NC_031940_p44 | hypothetical protein | phrog_60 | unknown function | unknown function | -1 | 21733 | 21996 |
| YP_009324821.1 | NC_031940_p110 | hypothetical protein | phrog_1138 | unknown function | unknown function | -1 | 61857 | 62390 |
| YP_009324830.1 | NC_031940_p119 | antirepressor | singleton | unknown function | unknown function | 1 | 67261 | 67584 |
| YP_009324781.1 | NC_031940_p70 | i-spanin (Rz) | phrog_214 | Rz-like spanin | lysis | 1 | 36214 | 36606 |
| YP_009324775.1 | NC_031940_p64 | hypothetical protein | phrog_96 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 32639 | 33487 |
| YP_009324842.1 | NC_031940_p131 | lytic enzyme | phrog_181 | endolysin | lysis | 1 | 75066 | 75680 |
| YP_009324810.1 | NC_031940_p99 | tail fiber assembly protein | phrog_136 | tail fiber assembly protein | tail | 1 | 56390 | 56965 |
| YP_009324735.1 | NC_031940_p24 | tail protein | phrog_177 | baseplate hub | tail | 1 | 11947 | 12639 |
| YP_009324716.1 | NC_031940_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 1077 | 2000 |
| YP_009324820.1 | NC_031940_p109 | hypothetical protein | phrog_1714 | unknown function | unknown function | -1 | 61598 | 61855 |
| YP_009324811.1 | NC_031940_p100 | hypothetical protein | phrog_2718 | unknown function | unknown function | -1 | 57079 | 57312 |
| YP_009324837.1 | NC_031940_p126 | hypothetical protein | phrog_129 | transcriptional regulator | transcription regulation | 1 | 71235 | 72095 |
| YP_009324731.1 | NC_031940_p20 | tail protein | phrog_17727 | tail length tape measure protein | tail | 1 | 9252 | 10211 |
| YP_009324816.1 | NC_031940_p105 | integrase protein | phrog_1 | integrase | integration and excision | -1 | 59175 | 60164 |
| YP_009324761.1 | NC_031940_p50 | hypothetical protein | phrog_36251 | unknown function | unknown function | 1 | 25151 | 25567 |
| YP_009324762.1 | NC_031940_p51 | hypothetical protein | phrog_28225 | unknown function | unknown function | -1 | 25530 | 25700 |
| YP_009324768.1 | NC_031940_p57 | antirepressor | phrog_821 | transcriptional regulator | transcription regulation | 1 | 27673 | 28815 |
| YP_009324758.1 | NC_031940_p47 | hypothetical protein | phrog_318 | deoxyribonucleoside 5' monophosphate phosphatase | other | -1 | 22871 | 23410 |
| YP_009324823.1 | NC_031940_p112 | hypothetical protein | phrog_210 | unknown function | unknown function | -1 | 63137 | 63964 |
| YP_009324786.1 | NC_031940_p75 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 37927 | 38421 |
| YP_009324784.1 | NC_031940_p73 | hypothetical protein | phrog_32515 | unknown function | unknown function | 1 | 37485 | 37628 |
| YP_009324722.1 | NC_031940_p11 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 4423 | 5310 |
| YP_009324785.1 | NC_031940_p74 | hypothetical protein | phrog_6050 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37673 | 37795 |
| YP_009324825.1 | NC_031940_p114 | hypothetical protein | phrog_36251 | unknown function | unknown function | 1 | 64741 | 65157 |
| YP_009324756.1 | NC_031940_p45 | hypothetical protein | phrog_1714 | unknown function | unknown function | -1 | 22007 | 22264 |
| YP_009324824.1 | NC_031940_p113 | hypothetical protein | phrog_204 | unknown function | unknown function | -1 | 64022 | 64555 |
| YP_009324813.1 | NC_031940_p102 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57548 | 57961 |
| YP_009324818.1 | NC_031940_p107 | endodeoxyribonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 60433 | 61002 |
| YP_009324757.1 | NC_031940_p46 | hypothetical protein | phrog_1138 | unknown function | unknown function | -1 | 22321 | 22800 |
| YP_009324766.1 | NC_031940_p55 | transcriptional regulator | phrog_101 | CII-like transcriptional activator | transcription regulation | 1 | 27122 | 27505 |
| YP_009324730.1 | NC_031940_p19 | tail protein | phrog_14441 | tail length tape measure protein | tail | 1 | 8281 | 8982 |
| YP_009324788.1 | NC_031940_p77 | integral membrane protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 40169 | 40345 |
| YP_009324713.1 | NC_031940_p2 | terminase large subunit | phrog_7331 | terminase large subunit | head and packaging | 1 | 295 | 564 |
| YP_009324759.1 | NC_031940_p48 | hypothetical protein | phrog_210 | unknown function | unknown function | -1 | 23547 | 24374 |
| YP_009324799.1 | NC_031940_p88 | tail sheath protein | phrog_165 | tail sheath | tail | 1 | 45611 | 47107 |
| YP_009324792.1 | NC_031940_p81 | major capsid protein precursor | phrog_10 | major head protein | head and packaging | 1 | 42229 | 43434 |
| YP_009324835.1 | NC_031940_p124 | DNA methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 69939 | 70832 |
| YP_009324736.1 | NC_031940_p25 | base plate assembly protein | phrog_11 | baseplate spike | tail | 1 | 12639 | 13172 |
| YP_009324741.1 | NC_031940_p30 | tail protein | singleton | unknown function | unknown function | 1 | 15702 | 16064 |
| YP_009324836.1 | NC_031940_p125 | holiday-junction resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 70829 | 71218 |
| YP_009324804.1 | NC_031940_p93 | tail protein | phrog_177 | baseplate hub | tail | 1 | 51170 | 52228 |
| YP_009324774.1 | NC_031940_p63 | hypothetical protein | phrog_129 | transcriptional regulator | transcription regulation | 1 | 31771 | 32631 |
| YP_009324712.1 | NC_031940_p1 | terminase large subunit | singleton | unknown function | unknown function | 1 | 11 | 262 |
| YP_009324803.1 | NC_031940_p92 | tail/DNA circulation protein | phrog_184 | baseplate hub | tail | 1 | 49833 | 51173 |
| YP_009324841.1 | NC_031940_p130 | holin | phrog_198 | holin | lysis | 1 | 74412 | 74798 |
| YP_009324827.1 | NC_031940_p116 | regulatory protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 65664 | 66359 |
| YP_009324778.1 | NC_031940_p67 | hypothetical protein | phrog_3501 | unknown function | unknown function | 1 | 34547 | 34804 |
| YP_009324728.1 | NC_031940_p17 | tail tube protein | phrog_185 | tail tube protein | tail | 1 | 7518 | 7874 |
| YP_009324793.1 | NC_031940_p82 | hypothetical protein | phrog_1020 | unknown function | unknown function | 1 | 43485 | 43685 |
| YP_009324833.1 | NC_031940_p122 | replication protein | phrog_270 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 68643 | 69455 |
| YP_009324760.1 | NC_031940_p49 | hypothetical protein | phrog_204 | unknown function | unknown function | -1 | 24432 | 24965 |
| YP_009324828.1 | NC_031940_p117 | DNA binding protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 66457 | 66681 |
| YP_009324779.1 | NC_031940_p68 | holin | phrog_198 | holin | lysis | 1 | 35015 | 35335 |
| YP_009324845.1 | NC_031940_p134 | hypothetical protein | phrog_32515 | unknown function | unknown function | 1 | 76949 | 77092 |
| YP_009324727.1 | NC_031940_p16 | tail sheath protein | phrog_11048 | tail sheath | tail | 1 | 7198 | 7518 |
| YP_009324763.1 | NC_031940_p52 | hypothetical protein | phrog_5259 | unknown function | unknown function | -1 | 25697 | 25870 |
| YP_009324748.1 | NC_031940_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18366 | 18521 |
| YP_009324744.1 | NC_031940_p33 | hypothetical protein | phrog_2718 | unknown function | unknown function | -1 | 17488 | 17721 |
| YP_009324739.1 | NC_031940_p28 | tail protein | phrog_203 | baseplate wedge subunit | tail | 1 | 14664 | 15251 |
| YP_009324800.1 | NC_031940_p89 | tail tube protein | phrog_185 | tail tube protein | tail | 1 | 47107 | 47463 |
| YP_009324844.1 | NC_031940_p133 | hypothetical protein | phrog_6169 | unknown function | unknown function | 1 | 76310 | 76864 |
| YP_009324752.1 | NC_031940_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20658 | 20804 |
| YP_009324740.1 | NC_031940_p29 | tail protein | phrog_2617 | short tail fiber protein | tail | 1 | 15238 | 15702 |
| YP_009324787.1 | NC_031940_p76 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 38490 | 40151 |
| YP_009324801.1 | NC_031940_p90 | hypothetical protein | phrog_166 | tail protein | tail | 1 | 47460 | 47786 |
| YP_009324747.1 | NC_031940_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18120 | 18278 |
| YP_009324770.1 | NC_031940_p59 | transcriptional activator | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 29032 | 30345 |
| YP_009324794.1 | NC_031940_p83 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 43688 | 44011 |
| YP_009324751.1 | NC_031940_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20565 | 20684 |
| YP_009324839.1 | NC_031940_p128 | antitermination protein Q | phrog_127 | anti-termination protein Q-like | transcription regulation | 1 | 73106 | 73858 |
| YP_009324812.1 | NC_031940_p101 | hypothetical protein | phrog_35882 | unknown function | unknown function | -1 | 57387 | 57500 |
| YP_009324832.1 | NC_031940_p121 | hypothetical protein | phrog_1153 | unknown function | unknown function | 1 | 68416 | 68640 |
| YP_009324749.1 | NC_031940_p38 | hypothetical protein | phrog_30685 | unknown function | unknown function | -1 | 18796 | 18912 |
| YP_009324822.1 | NC_031940_p111 | hypothetical protein | phrog_318 | deoxyribonucleoside 5' monophosphate phosphatase | other | -1 | 62461 | 63000 |
| YP_009324783.1 | NC_031940_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37170 | 37400 |
| YP_009324738.1 | NC_031940_p27 | base plate J protein | phrog_6 | baseplate wedge subunit | tail | 1 | 13582 | 14661 |
| YP_009324771.1 | NC_031940_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30356 | 30478 |
| YP_009324834.1 | NC_031940_p123 | transcriptional activator | phrog_1324 | transcriptional activator | transcription regulation | 1 | 69466 | 69939 |
| YP_009324808.1 | NC_031940_p97 | tail protein | phrog_203 | baseplate wedge subunit | tail | 1 | 54254 | 54841 |
| YP_009324715.1 | NC_031940_p4 | hypothetical protein | phrog_37237 | unknown function | unknown function | -1 | 838 | 1005 |
| YP_009324807.1 | NC_031940_p96 | base plate J protein | phrog_6 | baseplate wedge subunit | tail | 1 | 53172 | 54251 |
| YP_009324817.1 | NC_031940_p106 | hypothetical protein | phrog_1266 | excisionase | integration and excision | -1 | 60166 | 60393 |
| YP_009324769.1 | NC_031940_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28772 | 29017 |
| YP_009324718.1 | NC_031940_p7 | pro-head protease | singleton | unknown function | unknown function | 1 | 2507 | 2629 |
| YP_009324782.1 | NC_031940_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36847 | 37146 |
| YP_009324723.1 | NC_031940_p12 | hypothetical protein | phrog_10113 | unknown function | unknown function | 1 | 5307 | 5711 |
| YP_009324764.1 | NC_031940_p53 | regulatory protein | phrog_35195 | unknown function | unknown function | -1 | 26291 | 26692 |
| YP_009324753.1 | NC_031940_p42 | endodeoxyribonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 20844 | 21413 |
| YP_009324777.1 | NC_031940_p66 | antitermination protein Q | phrog_127 | anti-termination protein Q-like | transcription regulation | 1 | 33643 | 34395 |
| YP_009324826.1 | NC_031940_p115 | hypothetical protein | phrog_20296 | unknown function | unknown function | -1 | 65120 | 65458 |
| YP_009324814.1 | NC_031940_p103 | hypothetical protein | phrog_2718 | unknown function | unknown function | -1 | 57958 | 58170 |
| YP_009324743.1 | NC_031940_p32 | tail fiber assembly protein | singleton | unknown function | unknown function | 1 | 16798 | 17220 |
| YP_009324721.1 | NC_031940_p10 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 4103 | 4426 |
| YP_009324726.1 | NC_031940_p15 | tail sheath protein | singleton | unknown function | unknown function | 1 | 6461 | 7213 |
| YP_009324815.1 | NC_031940_p104 | hypothetical protein | phrog_30685 | unknown function | unknown function | -1 | 58386 | 58502 |
| YP_009324831.1 | NC_031940_p120 | antirepressor | phrog_821 | transcriptional regulator | transcription regulation | 1 | 67556 | 68419 |
| YP_009324733.1 | NC_031940_p22 | tail/DNA circulation protein | phrog_17109 | DNA circularization | DNA, RNA and nucleotide metabolism | 1 | 10970 | 11584 |
| YP_009324717.1 | NC_031940_p6 | pro-head protease | phrog_80 | head maturation protease | head and packaging | 1 | 1978 | 2556 |
| YP_009324734.1 | NC_031940_p23 | tail protein | singleton | unknown function | unknown function | 1 | 11648 | 11917 |
| YP_009324767.1 | NC_031940_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27492 | 27695 |
| YP_009324742.1 | NC_031940_p31 | tail protein | phrog_5454 | tail fiber protein | tail | 1 | 16064 | 16798 |
| YP_009324719.1 | NC_031940_p8 | major capsid protein precursor | phrog_10 | major head protein | head and packaging | 1 | 2644 | 3849 |
| YP_009324720.1 | NC_031940_p9 | hypothetical protein | phrog_1020 | unknown function | unknown function | 1 | 3900 | 4100 |
| YP_009324745.1 | NC_031940_p34 | hypothetical protein | phrog_35882 | unknown function | unknown function | -1 | 17796 | 17909 |