Genomic map of Salmonella phage 118970_sal3 (NC_031940)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_031940
Definition
Salmonella phage 118970_sal3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
77375
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
135
%GC
50.7
Number of singletons
21
Number of paralogs
41

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009324838.1 NC_031940_p127 hypothetical protein phrog_96 HNH endonuclease DNA, RNA and nucleotide metabolism 1 72103 73092
YP_009324737.1 NC_031940_p26 tail protein phrog_180 baseplate wedge subunit tail 1 13245 13589
YP_009324802.1 NC_031940_p91 tail protein phrog_28 tail length tape measure protein tail 1 47871 49799
YP_009324796.1 NC_031940_p85 hypothetical protein phrog_879 tail completion or Neck1 protein connector 1 44384 44896
YP_009324725.1 NC_031940_p14 tail sheath protein phrog_5292 tail sheath tail 1 6184 6474
YP_009324840.1 NC_031940_p129 hypothetical protein phrog_3501 unknown function unknown function 1 74009 74266
YP_009324790.1 NC_031940_p79 portal protein phrog_12 portal protein head and packaging 1 40624 41586
YP_009324772.1 NC_031940_p61 methyl-directed repair DNA adenine methylase phrog_56 DNA methyltransferase other 1 30475 31356
YP_009324789.1 NC_031940_p78 hypothetical protein phrog_37237 unknown function unknown function -1 40426 40593
YP_009324776.1 NC_031940_p65 hypothetical protein singleton unknown function unknown function 1 33495 33629
YP_009324750.1 NC_031940_p39 integrase protein phrog_1 integrase integration and excision -1 19586 20575
YP_009324798.1 NC_031940_p87 hypothetical protein phrog_208 unknown function unknown function 1 45457 45621
YP_009324714.1 NC_031940_p3 integral membrane protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 582 758
YP_009324843.1 NC_031940_p132 i-spanin (Rz) phrog_214 Rz-like spanin lysis 1 75677 76069
YP_009324806.1 NC_031940_p95 tail protein phrog_180 baseplate wedge subunit tail 1 52766 53179
YP_009324846.1 NC_031940_p135 hypothetical protein phrog_6050 HNH endonuclease DNA, RNA and nucleotide metabolism 1 77137 77265
YP_009324795.1 NC_031940_p84 hypothetical protein phrog_25 head closure Hc1 connector 1 44008 44412
YP_009324780.1 NC_031940_p69 lytic enzyme phrog_181 endolysin lysis 1 35603 36217
YP_009324805.1 NC_031940_p94 base plate assembly protein phrog_11 baseplate spike tail 1 52228 52761
YP_009324754.1 NC_031940_p43 hypothetical protein singleton unknown function unknown function -1 21417 21773
YP_009324791.1 NC_031940_p80 pro-head protease phrog_80 head maturation protease head and packaging 1 41564 42214
YP_009324724.1 NC_031940_p13 hypothetical protein phrog_5122 unknown function unknown function 1 5684 5866
YP_009324809.1 NC_031940_p98 tail protein phrog_454 tail fiber protein tail 1 54828 56390
YP_009324746.1 NC_031940_p35 hypothetical protein singleton unknown function unknown function -1 17957 18148
YP_009324829.1 NC_031940_p118 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation 1 66710 67264
YP_009324797.1 NC_031940_p86 hypothetical protein phrog_209 portal protein head and packaging 1 44893 45453
YP_009324773.1 NC_031940_p62 holiday-junction resolvase phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 31365 31754
YP_009324819.1 NC_031940_p108 hypothetical protein phrog_60 unknown function unknown function -1 61006 61587
YP_009324765.1 NC_031940_p54 DNA binding protein phrog_3 transcriptional repressor transcription regulation 1 26869 27093
YP_009324729.1 NC_031940_p18 hypothetical protein phrog_166 tail protein tail 1 7871 8269
YP_009324732.1 NC_031940_p21 tail/DNA circulation protein singleton unknown function unknown function 1 10533 10973
YP_009324755.1 NC_031940_p44 hypothetical protein phrog_60 unknown function unknown function -1 21733 21996
YP_009324821.1 NC_031940_p110 hypothetical protein phrog_1138 unknown function unknown function -1 61857 62390
YP_009324830.1 NC_031940_p119 antirepressor singleton unknown function unknown function 1 67261 67584
YP_009324781.1 NC_031940_p70 i-spanin (Rz) phrog_214 Rz-like spanin lysis 1 36214 36606
YP_009324775.1 NC_031940_p64 hypothetical protein phrog_96 HNH endonuclease DNA, RNA and nucleotide metabolism 1 32639 33487
YP_009324842.1 NC_031940_p131 lytic enzyme phrog_181 endolysin lysis 1 75066 75680
YP_009324810.1 NC_031940_p99 tail fiber assembly protein phrog_136 tail fiber assembly protein tail 1 56390 56965
YP_009324735.1 NC_031940_p24 tail protein phrog_177 baseplate hub tail 1 11947 12639
YP_009324716.1 NC_031940_p5 portal protein phrog_12 portal protein head and packaging 1 1077 2000
YP_009324820.1 NC_031940_p109 hypothetical protein phrog_1714 unknown function unknown function -1 61598 61855
YP_009324811.1 NC_031940_p100 hypothetical protein phrog_2718 unknown function unknown function -1 57079 57312
YP_009324837.1 NC_031940_p126 hypothetical protein phrog_129 transcriptional regulator transcription regulation 1 71235 72095
YP_009324731.1 NC_031940_p20 tail protein phrog_17727 tail length tape measure protein tail 1 9252 10211
YP_009324816.1 NC_031940_p105 integrase protein phrog_1 integrase integration and excision -1 59175 60164
YP_009324761.1 NC_031940_p50 hypothetical protein phrog_36251 unknown function unknown function 1 25151 25567
YP_009324762.1 NC_031940_p51 hypothetical protein phrog_28225 unknown function unknown function -1 25530 25700
YP_009324768.1 NC_031940_p57 antirepressor phrog_821 transcriptional regulator transcription regulation 1 27673 28815
YP_009324758.1 NC_031940_p47 hypothetical protein phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other -1 22871 23410
YP_009324823.1 NC_031940_p112 hypothetical protein phrog_210 unknown function unknown function -1 63137 63964
YP_009324786.1 NC_031940_p75 terminase small subunit phrog_83 terminase small subunit head and packaging 1 37927 38421
YP_009324784.1 NC_031940_p73 hypothetical protein phrog_32515 unknown function unknown function 1 37485 37628
YP_009324722.1 NC_031940_p11 hypothetical protein phrog_25 head closure Hc1 connector 1 4423 5310
YP_009324785.1 NC_031940_p74 hypothetical protein phrog_6050 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37673 37795
YP_009324825.1 NC_031940_p114 hypothetical protein phrog_36251 unknown function unknown function 1 64741 65157
YP_009324756.1 NC_031940_p45 hypothetical protein phrog_1714 unknown function unknown function -1 22007 22264
YP_009324824.1 NC_031940_p113 hypothetical protein phrog_204 unknown function unknown function -1 64022 64555
YP_009324813.1 NC_031940_p102 hypothetical protein singleton unknown function unknown function -1 57548 57961
YP_009324818.1 NC_031940_p107 endodeoxyribonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 60433 61002
YP_009324757.1 NC_031940_p46 hypothetical protein phrog_1138 unknown function unknown function -1 22321 22800
YP_009324766.1 NC_031940_p55 transcriptional regulator phrog_101 CII-like transcriptional activator transcription regulation 1 27122 27505
YP_009324730.1 NC_031940_p19 tail protein phrog_14441 tail length tape measure protein tail 1 8281 8982
YP_009324788.1 NC_031940_p77 integral membrane protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 40169 40345
YP_009324713.1 NC_031940_p2 terminase large subunit phrog_7331 terminase large subunit head and packaging 1 295 564
YP_009324759.1 NC_031940_p48 hypothetical protein phrog_210 unknown function unknown function -1 23547 24374
YP_009324799.1 NC_031940_p88 tail sheath protein phrog_165 tail sheath tail 1 45611 47107
YP_009324792.1 NC_031940_p81 major capsid protein precursor phrog_10 major head protein head and packaging 1 42229 43434
YP_009324835.1 NC_031940_p124 DNA methyltransferase phrog_111 DNA methyltransferase other 1 69939 70832
YP_009324736.1 NC_031940_p25 base plate assembly protein phrog_11 baseplate spike tail 1 12639 13172
YP_009324741.1 NC_031940_p30 tail protein singleton unknown function unknown function 1 15702 16064
YP_009324836.1 NC_031940_p125 holiday-junction resolvase phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 70829 71218
YP_009324804.1 NC_031940_p93 tail protein phrog_177 baseplate hub tail 1 51170 52228
YP_009324774.1 NC_031940_p63 hypothetical protein phrog_129 transcriptional regulator transcription regulation 1 31771 32631
YP_009324712.1 NC_031940_p1 terminase large subunit singleton unknown function unknown function 1 11 262
YP_009324803.1 NC_031940_p92 tail/DNA circulation protein phrog_184 baseplate hub tail 1 49833 51173
YP_009324841.1 NC_031940_p130 holin phrog_198 holin lysis 1 74412 74798
YP_009324827.1 NC_031940_p116 regulatory protein phrog_4 transcriptional repressor transcription regulation -1 65664 66359
YP_009324778.1 NC_031940_p67 hypothetical protein phrog_3501 unknown function unknown function 1 34547 34804
YP_009324728.1 NC_031940_p17 tail tube protein phrog_185 tail tube protein tail 1 7518 7874
YP_009324793.1 NC_031940_p82 hypothetical protein phrog_1020 unknown function unknown function 1 43485 43685
YP_009324833.1 NC_031940_p122 replication protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 68643 69455
YP_009324760.1 NC_031940_p49 hypothetical protein phrog_204 unknown function unknown function -1 24432 24965
YP_009324828.1 NC_031940_p117 DNA binding protein phrog_3 transcriptional repressor transcription regulation 1 66457 66681
YP_009324779.1 NC_031940_p68 holin phrog_198 holin lysis 1 35015 35335
YP_009324845.1 NC_031940_p134 hypothetical protein phrog_32515 unknown function unknown function 1 76949 77092
YP_009324727.1 NC_031940_p16 tail sheath protein phrog_11048 tail sheath tail 1 7198 7518
YP_009324763.1 NC_031940_p52 hypothetical protein phrog_5259 unknown function unknown function -1 25697 25870
YP_009324748.1 NC_031940_p37 hypothetical protein singleton unknown function unknown function -1 18366 18521
YP_009324744.1 NC_031940_p33 hypothetical protein phrog_2718 unknown function unknown function -1 17488 17721
YP_009324739.1 NC_031940_p28 tail protein phrog_203 baseplate wedge subunit tail 1 14664 15251
YP_009324800.1 NC_031940_p89 tail tube protein phrog_185 tail tube protein tail 1 47107 47463
YP_009324844.1 NC_031940_p133 hypothetical protein phrog_6169 unknown function unknown function 1 76310 76864
YP_009324752.1 NC_031940_p41 hypothetical protein singleton unknown function unknown function -1 20658 20804
YP_009324740.1 NC_031940_p29 tail protein phrog_2617 short tail fiber protein tail 1 15238 15702
YP_009324787.1 NC_031940_p76 terminase large subunit phrog_9 terminase large subunit head and packaging 1 38490 40151
YP_009324801.1 NC_031940_p90 hypothetical protein phrog_166 tail protein tail 1 47460 47786
YP_009324747.1 NC_031940_p36 hypothetical protein singleton unknown function unknown function -1 18120 18278
YP_009324770.1 NC_031940_p59 transcriptional activator phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 29032 30345
YP_009324794.1 NC_031940_p83 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 43688 44011
YP_009324751.1 NC_031940_p40 hypothetical protein singleton unknown function unknown function 1 20565 20684
YP_009324839.1 NC_031940_p128 antitermination protein Q phrog_127 anti-termination protein Q-like transcription regulation 1 73106 73858
YP_009324812.1 NC_031940_p101 hypothetical protein phrog_35882 unknown function unknown function -1 57387 57500
YP_009324832.1 NC_031940_p121 hypothetical protein phrog_1153 unknown function unknown function 1 68416 68640
YP_009324749.1 NC_031940_p38 hypothetical protein phrog_30685 unknown function unknown function -1 18796 18912
YP_009324822.1 NC_031940_p111 hypothetical protein phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other -1 62461 63000
YP_009324783.1 NC_031940_p72 hypothetical protein singleton unknown function unknown function 1 37170 37400
YP_009324738.1 NC_031940_p27 base plate J protein phrog_6 baseplate wedge subunit tail 1 13582 14661
YP_009324771.1 NC_031940_p60 hypothetical protein singleton unknown function unknown function 1 30356 30478
YP_009324834.1 NC_031940_p123 transcriptional activator phrog_1324 transcriptional activator transcription regulation 1 69466 69939
YP_009324808.1 NC_031940_p97 tail protein phrog_203 baseplate wedge subunit tail 1 54254 54841
YP_009324715.1 NC_031940_p4 hypothetical protein phrog_37237 unknown function unknown function -1 838 1005
YP_009324807.1 NC_031940_p96 base plate J protein phrog_6 baseplate wedge subunit tail 1 53172 54251
YP_009324817.1 NC_031940_p106 hypothetical protein phrog_1266 excisionase integration and excision -1 60166 60393
YP_009324769.1 NC_031940_p58 hypothetical protein singleton unknown function unknown function -1 28772 29017
YP_009324718.1 NC_031940_p7 pro-head protease singleton unknown function unknown function 1 2507 2629
YP_009324782.1 NC_031940_p71 hypothetical protein singleton unknown function unknown function 1 36847 37146
YP_009324723.1 NC_031940_p12 hypothetical protein phrog_10113 unknown function unknown function 1 5307 5711
YP_009324764.1 NC_031940_p53 regulatory protein phrog_35195 unknown function unknown function -1 26291 26692
YP_009324753.1 NC_031940_p42 endodeoxyribonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 20844 21413
YP_009324777.1 NC_031940_p66 antitermination protein Q phrog_127 anti-termination protein Q-like transcription regulation 1 33643 34395
YP_009324826.1 NC_031940_p115 hypothetical protein phrog_20296 unknown function unknown function -1 65120 65458
YP_009324814.1 NC_031940_p103 hypothetical protein phrog_2718 unknown function unknown function -1 57958 58170
YP_009324743.1 NC_031940_p32 tail fiber assembly protein singleton unknown function unknown function 1 16798 17220
YP_009324721.1 NC_031940_p10 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 4103 4426
YP_009324726.1 NC_031940_p15 tail sheath protein singleton unknown function unknown function 1 6461 7213
YP_009324815.1 NC_031940_p104 hypothetical protein phrog_30685 unknown function unknown function -1 58386 58502
YP_009324831.1 NC_031940_p120 antirepressor phrog_821 transcriptional regulator transcription regulation 1 67556 68419
YP_009324733.1 NC_031940_p22 tail/DNA circulation protein phrog_17109 DNA circularization DNA, RNA and nucleotide metabolism 1 10970 11584
YP_009324717.1 NC_031940_p6 pro-head protease phrog_80 head maturation protease head and packaging 1 1978 2556
YP_009324734.1 NC_031940_p23 tail protein singleton unknown function unknown function 1 11648 11917
YP_009324767.1 NC_031940_p56 hypothetical protein singleton unknown function unknown function 1 27492 27695
YP_009324742.1 NC_031940_p31 tail protein phrog_5454 tail fiber protein tail 1 16064 16798
YP_009324719.1 NC_031940_p8 major capsid protein precursor phrog_10 major head protein head and packaging 1 2644 3849
YP_009324720.1 NC_031940_p9 hypothetical protein phrog_1020 unknown function unknown function 1 3900 4100
YP_009324745.1 NC_031940_p34 hypothetical protein phrog_35882 unknown function unknown function -1 17796 17909