| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_031942 |
Definition |
Streptococcus phage phiARI0462, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
40498 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
40.54 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009324907.1 | NC_031942_p24 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | -1 | 24244 | 24666 |
| YP_009324885.1 | NC_031942_p2 | amidase_2 domain protein | phrog_1110 | endolysin | lysis | -1 | 534 | 1490 |
| YP_009324887.1 | NC_031942_p4 | hypothetical protein | phrog_1164 | unknown function | unknown function | -1 | 2139 | 2489 |
| YP_009324919.1 | NC_031942_p36 | DUF1351 domain protein | phrog_674 | unknown function | unknown function | -1 | 30696 | 31760 |
| YP_009324908.1 | NC_031942_p25 | YopX domain protein | phrog_98 | unknown function | unknown function | -1 | 25415 | 25825 |
| YP_009324905.1 | NC_031942_p22 | terminase_3 domain protein | phrog_2 | terminase large subunit | head and packaging | -1 | 22054 | 23379 |
| YP_009324902.1 | NC_031942_p19 | hypothetical protein | phrog_3514 | unknown function | unknown function | -1 | 18816 | 19025 |
| YP_009324910.1 | NC_031942_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26296 | 26406 |
| YP_009324906.1 | NC_031942_p23 | terminase_2 domain protein | phrog_51 | terminase small subunit | head and packaging | -1 | 23330 | 23809 |
| YP_009324909.1 | NC_031942_p26 | hypothetical protein | phrog_2715 | unknown function | unknown function | -1 | 25844 | 26293 |
| YP_009324915.1 | NC_031942_p32 | hypothetical protein | phrog_1341 | unknown function | unknown function | -1 | 28332 | 28661 |
| YP_009324931.1 | NC_031942_p48 | hypothetical protein | phrog_5570 | unknown function | unknown function | -1 | 36685 | 36960 |
| YP_009324896.1 | NC_031942_p13 | hypothetical protein | phrog_933 | unknown function | unknown function | -1 | 15907 | 16095 |
| YP_009324893.1 | NC_031942_p10 | tail_3 domain protein | phrog_158 | major tail protein | tail | -1 | 14004 | 14417 |
| YP_009324888.1 | NC_031942_p5 | hypothetical protein | phrog_1137 | unknown function | unknown function | -1 | 2492 | 2695 |
| YP_009324911.1 | NC_031942_p28 | hypothetical protein | phrog_121 | unknown function | unknown function | -1 | 26406 | 27077 |
| YP_009324920.1 | NC_031942_p37 | RecT domain protein | phrog_2760 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 31770 | 32522 |
| YP_009324917.1 | NC_031942_p34 | SSB domain protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29366 | 29782 |
| YP_009324886.1 | NC_031942_p3 | holin | phrog_608 | holin | lysis | -1 | 1494 | 1826 |
| YP_009324932.1 | NC_031942_p49 | HTH_19 domain protein | phrog_4 | transcriptional repressor | transcription regulation | 1 | 37117 | 37905 |
| YP_009324929.1 | NC_031942_p46 | hypothetical protein | phrog_2542 | unknown function | unknown function | 1 | 36003 | 36452 |
| YP_009324918.1 | NC_031942_p35 | hypothetical protein | phrog_5262 | unknown function | unknown function | -1 | 29779 | 29877 |
| YP_009324889.1 | NC_031942_p6 | peptidase_S74 domain protein | phrog_1210 | PblB-type receptor binding | other | -1 | 2789 | 9229 |
| YP_009324891.1 | NC_031942_p8 | hypothetical protein | phrog_1535 | tail length tape measure protein | tail | -1 | 9593 | 13243 |
| YP_009324901.1 | NC_031942_p18 | HD_4 domain protein | phrog_990 | metal-dependent phosphohydrolase | other | -1 | 18406 | 18819 |
| YP_009324934.1 | NC_031942_p51 | integrase | phrog_95 | integrase | integration and excision | 1 | 39037 | 40482 |
| YP_009324914.1 | NC_031942_p31 | rusA domain protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 27907 | 28335 |
| YP_009324927.1 | NC_031942_p44 | hypothetical protein | phrog_4192 | unknown function | unknown function | -1 | 34116 | 34319 |
| YP_009324928.1 | NC_031942_p45 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 34942 | 35130 |
| YP_009324904.1 | NC_031942_p21 | hypothetical protein | phrog_64 | portal protein | head and packaging | -1 | 20573 | 22042 |
| YP_009324890.1 | NC_031942_p7 | hypothetical protein | phrog_1194 | unknown function | unknown function | -1 | 9234 | 9584 |
| YP_009324924.1 | NC_031942_p41 | hypothetical protein | phrog_2648 | unknown function | unknown function | -1 | 33277 | 33480 |
| YP_009324903.1 | NC_031942_p20 | hypothetical protein | phrog_2841 | minor head protein | head and packaging | -1 | 19027 | 20610 |
| YP_009324913.1 | NC_031942_p30 | hypothetical protein | phrog_2131 | unknown function | unknown function | -1 | 27441 | 27863 |
| YP_009324916.1 | NC_031942_p33 | methyltransf_25 domain protein | phrog_954 | DNA methyltransferase | other | -1 | 28850 | 29356 |
| YP_009324933.1 | NC_031942_p50 | hypothetical protein | phrog_13411 | MazF-like growth inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 38293 | 38727 |
| YP_009324895.1 | NC_031942_p12 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 14785 | 15300 |
| YP_009324900.1 | NC_031942_p17 | hypothetical protein | phrog_419 | unknown function | unknown function | -1 | 18118 | 18363 |
| YP_009324897.1 | NC_031942_p14 | CBM_5_12 domain protein | phrog_422 | major head protein | head and packaging | -1 | 16105 | 17130 |
| YP_009324930.1 | NC_031942_p47 | hypothetical protein | phrog_2798 | unknown function | unknown function | -1 | 36443 | 36574 |
| YP_009324892.1 | NC_031942_p9 | hypothetical protein | phrog_183 | tail chaperone protein | tail | -1 | 13619 | 13999 |
| YP_009324925.1 | NC_031942_p42 | hypothetical protein | phrog_3624 | unknown function | unknown function | -1 | 33480 | 33641 |
| YP_009324899.1 | NC_031942_p16 | hypothetical protein | phrog_918 | unknown function | unknown function | -1 | 17865 | 18116 |
| YP_009324884.1 | NC_031942_p1 | hypothetical protein | phrog_12172 | unknown function | unknown function | -1 | 6 | 263 |
| YP_009324923.1 | NC_031942_p40 | hypothetical protein | phrog_3819 | unknown function | unknown function | -1 | 33024 | 33284 |
| YP_009324894.1 | NC_031942_p11 | hypothetical protein | phrog_78 | tail terminator | connector | -1 | 14420 | 14788 |
| YP_009324922.1 | NC_031942_p39 | hypothetical protein | phrog_4614 | unknown function | unknown function | -1 | 32791 | 32907 |
| YP_009324898.1 | NC_031942_p15 | DUF4355 domain protein | phrog_172 | head scaffolding protein | head and packaging | -1 | 17153 | 17662 |
| YP_009324926.1 | NC_031942_p43 | hypothetical protein | phrog_7728 | unknown function | unknown function | 1 | 33968 | 34159 |
| YP_009324912.1 | NC_031942_p29 | hypothetical protein | phrog_834 | unknown function | unknown function | -1 | 27067 | 27396 |
| YP_009324921.1 | NC_031942_p38 | hypothetical protein | phrog_16291 | unknown function | unknown function | -1 | 32540 | 32725 |